API

• preprocessing
  • summarize_counts()
  • norma_log()
  • scale_batch()
  • hvg_intersect()
  • hvg_batch()
  • reduce_data()
• alignment
  • stereoAlign.alignment.bbknn_alignment
  • stereoAlign.alignment.combat_alignment
  • stereoAlign.alignment.desc_alignment
  • stereoAlign.alignment.harmony_alignment
  • stereoAlign.alignment.mnn_alignment
  • stereoAlign.alignment.scalex_alignment
  • stereoAlign.alignment.scanorama_alignment
  • stereoAlign.alignment.scgen_alignment
  • stereoAlign.alignment.scvi_alignment
  • stereoAlign.alignment.spatialign_alignment
• metrics
  • stereoAlign.metrics.ari
  • stereoAlign.metrics.graph_connectivity
  • stereoAlign.metrics.kbet
  • stereoAlign.metrics.lisi
  • stereoAlign.metrics.silhouette
  • stereoAlign.metrics.silhouette_batch