alignment

stereoAlign.alignment.bbknn_alignment(adata, ...)

BBKNN wrapper function

stereoAlign.alignment.combat_alignment(...)

ComBat wrapper function (scanpy implementation)

stereoAlign.alignment.desc_alignment(adata, ...)

DESC wrapper function

stereoAlign.alignment.harmony_alignment(...)

Harmony wrapper function

stereoAlign.alignment.mnn_alignment(adata, ...)

MNN wrapper function (mnnpy implementation)

stereoAlign.alignment.scalex_alignment(adata)

scalex wrapper function

stereoAlign.alignment.scanorama_alignment(...)

Scanorama wrapper function

stereoAlign.alignment.scgen_alignment(adata, ...)

scGen wrapper function

stereoAlign.alignment.scvi_alignment(adata, ...)

scVI wrapper function

stereoAlign.alignment.spatialign_alignment(adata)

spatiAlign wrapper function